day1/session2.tex
author Puneeth Chaganti <punchagan@gmail.com>
Thu, 09 Dec 2010 18:39:26 +0530
branchscipyin2010
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permissions -rw-r--r--
Changed session-2 - now uses loadtxt.
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%Tutorial slides on Python.
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%
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% Author: FOSSEE
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% Copyright (c) 2009, FOSSEE, IIT Bombay
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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\documentclass[14pt,compress]{beamer}
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%\documentclass[draft]{beamer}
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%\documentclass[compress,handout]{beamer}
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%\usepackage{pgfpages} 
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%\pgfpagesuselayout{2 on 1}[a4paper,border shrink=5mm]
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% Modified from: generic-ornate-15min-45min.de.tex
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\mode<presentation>
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{
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  \usetheme{Warsaw}
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  \useoutertheme{infolines}
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  \setbeamercovered{transparent}
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}
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\usepackage[english]{babel}
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\usepackage[latin1]{inputenc}
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%\usepackage{times}
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\usepackage[T1]{fontenc}
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% Taken from Fernando's slides.
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\usepackage{ae,aecompl}
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\usepackage{mathpazo,courier,euler}
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\usepackage[scaled=.95]{helvet}
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\definecolor{darkgreen}{rgb}{0,0.5,0}
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\usepackage{listings}
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\lstset{language=Python,
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    basicstyle=\ttfamily\bfseries,
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    commentstyle=\color{red}\itshape,
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  stringstyle=\color{darkgreen},
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  showstringspaces=false,
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  keywordstyle=\color{blue}\bfseries}
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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% Macros
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\setbeamercolor{emphbar}{bg=blue!20, fg=black}
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\newcommand{\emphbar}[1]
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{\begin{beamercolorbox}[rounded=true]{emphbar} 
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      {#1}
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 \end{beamercolorbox}
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}
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\newcounter{time}
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\setcounter{time}{0}
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\newcommand{\inctime}[1]{\addtocounter{time}{#1}{\tiny \thetime\ m}}
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\newcommand{\typ}[1]{\lstinline{#1}}
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\newcommand{\kwrd}[1]{ \texttt{\textbf{\color{blue}{#1}}}  }
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%%% This is from Fernando's setup.
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% \usepackage{color}
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% \definecolor{orange}{cmyk}{0,0.4,0.8,0.2}
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% % Use and configure listings package for nicely formatted code
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% \usepackage{listings}
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% \lstset{
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%    language=Python,
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%    basicstyle=\small\ttfamily,
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%    commentstyle=\ttfamily\color{blue},
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%    stringstyle=\ttfamily\color{orange},
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%    showstringspaces=false,
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%    breaklines=true,
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%    postbreak = \space\dots
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% }
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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% Title page
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\title[Plotting with Python]{Python for Science and Engg: Plotting experimental data}
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\author[FOSSEE group] {FOSSEE}
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\institute[IIT Bombay] {Department of Aerospace Engineering\\IIT Bombay}
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\date[] {SciPy.in 2010, Tutorials}
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%\pgfdeclareimage[height=0.75cm]{iitmlogo}{iitmlogo}
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%\logo{\pgfuseimage{iitmlogo}}
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%% Delete this, if you do not want the table of contents to pop up at
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%% the beginning of each subsection:
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\AtBeginSubsection[]
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{
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  \begin{frame}<beamer>
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    \frametitle{Outline}
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    \tableofcontents[currentsection,currentsubsection]
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  \end{frame}
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}
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\AtBeginSection[]
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{
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  \begin{frame}<beamer>
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    \frametitle{Outline}
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    \tableofcontents[currentsection,currentsubsection]
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  \end{frame}
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}
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% If you wish to uncover everything in a step-wise fashion, uncomment
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% the following command: 
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%\beamerdefaultoverlayspecification{<+->}
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%\includeonlyframes{current,current1,current2,current3,current4,current5,current6}
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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% DOCUMENT STARTS
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\begin{document}
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\begin{frame}
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  \titlepage
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\end{frame}
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\begin{frame}
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  \frametitle{Outline}
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  \tableofcontents
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  % You might wish to add the option [pausesections]
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\end{frame}
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\section{Plotting Points}
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\begin{frame}[fragile]
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\frametitle{Why would I plot f(x)?}
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Do we plot analytical functions or experimental data?
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\begin{small}
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\begin{lstlisting}
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In []: time = [0, 1, 2, 3]
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In []: distance = [7, 11, 15, 19]
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In []: plot(time, distance)
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Out[]: [<matplotlib.lines.Line2D object at 0xa73aa8c>]
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In []: xlabel('time')
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Out[]: <matplotlib.text.Text object at 0x986e9ac>
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In []: ylabel('distance')
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Out[]: <matplotlib.text.Text object at 0x98746ec>
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\end{lstlisting}
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\end{small}
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\end{frame}
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\begin{frame}[fragile]
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\begin{figure}
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\includegraphics[width=3.5in]{data/straightline.png}
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\end{figure}
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\alert{Is this what you have?}
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\end{frame}
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\begin{frame}[fragile]
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\frametitle{Plotting points}
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\begin{itemize}
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\item What if we want to plot the points?
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\end{itemize}
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\begin{lstlisting}
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  In []: clf()
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  In []: plot(time, distance, 'o')
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  Out[]: [<matplotlib.lines.Line2D object at 0xac17e0c>]
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  In []: clf()
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  In []: plot(time, distance, '.')
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  Out[]: [<matplotlib.lines.Line2D object at 0xac17e0c>]
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\end{lstlisting}
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\end{frame}
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\begin{frame}[fragile]
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\begin{figure}
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\includegraphics[interpolate=true,width=2.35in]{data/stline_dots.png}
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\includegraphics[interpolate=true,width=2.35in]{data/stline_points.png}
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\end{figure}
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\end{frame}
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\begin{frame}[fragile]
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\frametitle{Additional Line Styles}
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\begin{itemize}
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  \item \typ{'o'} - Filled circles
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  \item \typ{'.'} - Small Dots
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  \item \typ{'-'} - Lines
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  \item \typ{'--'} - Dashed lines
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\end{itemize}
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\end{frame}
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\section{Lists}
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\begin{frame}[fragile]
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  \frametitle{Lists: Introduction}
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  \begin{lstlisting}
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    In []: time = [0, 1, 2, 3]
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    In []: distance = [7, 11, 15, 19]
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  \end{lstlisting}
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What are \typ{x} and \typ{y}?\\
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\begin{center}
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\alert{\typ{lists!!}}
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\end{center}
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\end{frame}
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\begin{frame}[fragile]
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\frametitle{Lists: Initializing \& accessing elements}
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\begin{lstlisting}
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In []: mtlist = [] 
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\end{lstlisting}
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\emphbar{Empty List}
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\begin{lstlisting}
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In []: p = [ 2, 3, 5, 7] 
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In []: p[1]
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Out[]: 3
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In []: p[0]+p[1]+p[-1]
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Out[]: 12
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\end{lstlisting}
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\end{frame}
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\begin{frame}[fragile]
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\frametitle{List: Appending elements}
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\begin{lstlisting}
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In []: p.append(11)
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In []: p
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Out[]: [ 2, 3, 5, 7, 11]
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In []: b = [11, 13, 17]
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In []: p.append(b)
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Out[]: [ 2, 3, 5, 7, 11, [11, 13, 17]]
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\end{lstlisting}
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%\inctime{10}
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\end{frame}
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\section{Simple Pendulum}
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\begin{frame}[fragile]
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\frametitle{Simple Pendulum - L and T}
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Let us look at the Simple Pendulum experiment.
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\begin{center}
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\begin{small}
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\begin{tabular}{| c | c | c |}
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\hline
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$L$ & $T$ & $T^2$ \\ \hline
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0.1 & 0.69 & \\ \hline
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0.2 & 0.90 & \\ \hline
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0.3 & 1.19 & \\ \hline
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0.4 & 1.30 & \\ \hline
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0.5 & 1.47 & \\ \hline
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0.6 & 1.58 & \\ \hline
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0.7 & 1.77 & \\ \hline
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0.8 & 1.83 & \\ \hline
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0.9 & 1.94 & \\ \hline
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\end{tabular}
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\end{small}\\
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\alert{$L \alpha T^2$}
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\end{center}
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Our data is present in \typ{pendulum.txt}. Let's look at it.
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\end{frame}
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\begin{frame}[fragile]
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    \frametitle{Gotcha and an aside}
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    Ensure you are in the same directory as \typ{pendulum.txt}\\
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    if not, do the following on IPython:
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    \begin{lstlisting}
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In []: %cd directory_containing_file
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# Check if pendulum.txt is there.
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In []: ls
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# Also try 
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In []: !ls
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    \end{lstlisting}
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    \alert{Note:} \typ{\%cd} is an IPython magic command.  For more information
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    do:
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    \begin{lstlisting}
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In []: ?
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    \end{lstlisting}
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\end{frame}
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\begin{frame}[fragile]
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\frametitle{Looking at \typ{pendulum.txt}}
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\begin{lstlisting} 
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In []: cat pendulum.txt 
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1.0000e-01 6.9004e-01
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1.1000e-01 6.9497e-01
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1.2000e-01 7.4252e-01
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1.3000e-01 7.5360e-01
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\end{lstlisting}  %$
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\ldots
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\begin{itemize}
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  \item File contains L vs.\ T values 
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  \item First Column -- L values
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  \item Second Column -- T values
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\end{itemize}
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\end{frame}
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\begin{frame}[fragile]
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  \frametitle{\typ{loadtxt}}
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  \begin{itemize}
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  \item We shall use the \typ{loadtxt} command to load data
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  \item Let's use \typ{primes.txt} file learn to use it
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  \item \typ{primes.txt} has a single column
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  \item Then, we shall use it for \typ{pendulum.txt} -- 2 cols
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  \end{itemize}
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\end{frame}
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\begin{frame}[fragile]
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\frametitle{What's in \typ{primes.txt}?}
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Lets look at the \typ{primes.txt} file.
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\begin{lstlisting} 
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In []: cat primes.txt 
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2
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3      
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5      
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7     
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11     
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13
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.
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.
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.
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\end{lstlisting}  %$
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\end{frame}
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441
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\begin{frame}[fragile]
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  \frametitle{\typ{loadtxt} \ldots}
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  \begin{lstlisting}
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In []: primes = loadtxt('primes.txt')
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In []: primes
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Out[]: array([ 2., 3., 5., 7., 11., 13., 
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               17., 19., 23., 29., 31., 
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               37., 41., 43., 47., 53., 
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               59., 61., 67., 71., 73., 
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               79., 83., 89., 97.])
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  \end{lstlisting}
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408
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\end{frame}
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\begin{frame}[fragile]
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  \frametitle{Reading \typ{pendulum.txt}}
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  \begin{lstlisting}
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In []: pend = loadtxt('pendulum.txt')
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In []: pend
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  \end{lstlisting}
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  \begin{itemize}
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  \item \typ{pend} is 2 Dimensional. 
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  \item We don't \alert{yet} know how to handle it.
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  \item We obtain 1D sequences using \typ{unpack=True}
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  \end{itemize}
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  \begin{lstlisting}
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In []: L, T = loadtxt('pendulum.txt', 
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                      unpack=True)
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In []: print L, T
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In []: print len(L), len(T)
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Out[]: 90 90
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  \end{lstlisting}
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\end{frame}
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\begin{frame}[fragile]
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\frametitle{Plotting $L$ vs $T^2$}
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\begin{itemize}
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\item We must square each of the values in \typ{T}
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\item How to do it?
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\item We use a \kwrd{for} loop to iterate over \typ{T}
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\end{itemize}
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\end{frame}
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   367
274
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   368
\begin{frame}[fragile]
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\frametitle{Plotting $L$ vs $T^2$}
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   370
\begin{lstlisting}
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In []: tsq = []
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   372
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In []: for time in T:
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 ....:     tsq.append(time*time)
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 ....:
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 ....:
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   377
274
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   378
\end{lstlisting}
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\alert{Hit ``ENTER'' key twice, to get out of \typ{for} loop}.
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   380
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   381
\begin{lstlisting}
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In []: print len(tsq)
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Out[]: 90
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   384
\end{lstlisting}
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\typ{tsq} is a \kwrd{list} of squares of \typ{T} values.
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   386
\end{frame}
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   387
441
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   388
274
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   389
\begin{frame}[fragile]
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\frametitle{Plotting $L$ vs $T^2$ \ldots}
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   391
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\begin{lstlisting}
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In []: plot(L, tsq, '.')
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\end{lstlisting}
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274
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   396
\begin{figure}
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  \includegraphics[width=3.5in]{data/L-Tsq.png}
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   398
\end{figure}
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   399
274
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\end{frame}
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   401
193
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   402
\section {Summary}
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\begin{frame}[fragile]
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\frametitle{What did we learn?}
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   405
\begin{itemize}
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   406
  \item Plot attributes and plotting points
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   407
  \item Lists
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   408
  \item \kwrd{for}
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   409
  \item Loading data from files
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   410
\end{itemize}
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   411
\end{frame}
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   412
109
16e04782baac Added session2.tex.
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   413
\end{document}
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%% Questions for Quiz %%
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%% ------------------ %%
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\begin{frame}[fragile]
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\frametitle{\incqno }
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  \begin{lstlisting}
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  In []: a = [1, 2, 5, 9]
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  In []: a[0:-1]
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  \end{lstlisting}
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  What is the output?
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\end{frame}
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   426
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\begin{frame}
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\frametitle{\incqno }
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  How do you combine two lists \emph{a} and \emph{b} to produce one list?
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\end{frame}
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   431
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\begin{frame}[fragile]
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\frametitle{\incqno }
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  \begin{lstlisting}
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  In []: a = [1, 2, 5, 9]
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  \end{lstlisting}
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  How do you add the value 10 to the end of this list?
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\end{frame}
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   439
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\begin{frame}
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\frametitle{\incqno }
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   442
Write the code to read a file \texttt{data.txt} and print each line of it?
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\end{frame}
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   444
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\begin{frame}[fragile]
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   446
\frametitle{\incqno }
352
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   447
What would be the result of the following code snippet:
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   448
\begin{lstlisting}
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   449
In []: x = linspace(0, 10, 50)
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   450
In []: y = linspace(50, 100, 100)
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   451
In []: plot(x, y)
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   452
\end{lstlisting}
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   453
\end{frame}
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   454
b44d7bcc6609 Added a few quiz questions; Minor edits.
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   455
\begin{frame}[fragile]
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diff changeset
   456
\frametitle{\incqno }
343
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   457
The following code snippet has an error/bug:
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   458
\begin{lstlisting}
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   459
In []: l = [0.1, 0.2, 0.3, 0.4]
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   460
In []: t = [0.69, 0.90, 1.19, 1.30]
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   461
In []: tsq = []
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   462
In []: for time in t:
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   463
 ....:     tsq.append(time*time)
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   464
 ....:     plot(l, tsq)
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   465
\end{lstlisting}
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   466
What is the error? How do you fix it?
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   467
\end{frame}