app/graph/accessibility.py
author Sverre Rabbelier <srabbelier@gmail.com>
Thu, 27 Nov 2008 21:57:24 +0000
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Proper working implementation of a cycle detection algorithm, that returns the cycles (rather than printing them) by constructing the path between the two nodes that were found to be cyclic. Patch by: Sverre Rabbelier
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# Copyright (c) 2007-2008 Pedro Matiello <pmatiello@gmail.com>
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#
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# Permission is hereby granted, free of charge, to any person
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# obtaining a copy of this software and associated documentation
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# files (the "Software"), to deal in the Software without
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# restriction, including without limitation the rights to use,
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# copy, modify, merge, publish, distribute, sublicense, and/or sell
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# copies of the Software, and to permit persons to whom the
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# Software is furnished to do so, subject to the following
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# conditions:
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# The above copyright notice and this permission notice shall be
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# included in all copies or substantial portions of the Software.
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# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
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# OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
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# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
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# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
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# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
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# OTHER DEALINGS IN THE SOFTWARE.
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"""
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Accessibility algorithms for python-graph.
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@sort: accessibility, connected_components, cut_edges, cut_nodes, mutual_accessibility
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"""
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# Transitive-closure
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def accessibility(graph):
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	"""
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	Accessibility matrix (transitive closure).
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	@type  graph: graph
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	@param graph: Graph.
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	@rtype:  dictionary
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	@return: Accessibility information for each node.
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	"""
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	accessibility = {}		# Accessibility matrix
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	# For each node i, mark each node j if that exists a path from i to j.
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	for each in graph:
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		access = {}
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		# Perform DFS to explore all reachable nodes
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		_dfs(graph, access, 1, each)
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		accessibility[each] = access.keys()
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	return accessibility
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# Strongly connected components
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def mutual_accessibility(graph):
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	"""
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	Mutual-accessibility matrix (strongly connected components).
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	@type  graph: graph
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	@param graph: Graph.
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	@rtype:  dictionary
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	@return: Mutual-accessibility information for each node.
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	"""
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	mutual_access = {}
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	access = graph.accessibility()
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	for i in graph:
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		mutual_access[i] = []
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		for j in graph:
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			if (i in access[j] and j in access[i]):
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				mutual_access[i].append(j)
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	return mutual_access
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# Connected components
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def connected_components(graph):
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	"""
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	Connected components.
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	@attention: Indentification of connected components is meaningful only for non-directed graphs.
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	@type  graph: graph
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	@param graph: Graph.
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	@rtype:  dictionary
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	@return: Pairing that associates each node to its connected component.
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	"""
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	visited = {}
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	count = 1
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	# For 'each' node not found to belong to a connected component, find its connected component.
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	for each in graph:
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		if (each not in visited):
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			_dfs(graph, visited, count, each)
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			count = count + 1
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	return visited
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# Limited DFS implementations used by algorithms here
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def _dfs(graph, visited, count, node):
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	"""
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	Depht-first search subfunction adapted for accessibility algorithms.
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	@type  graph: graph
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	@param graph: Graph.
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	@type  visited: dictionary
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	@param visited: List of nodes (visited nodes are marked non-zero).
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	@type  count: number
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	@param count: Counter of connected components.
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	@type  node: number
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	@param node: Node to be explored by DFS.
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	"""
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	visited[node] = count
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	# Explore recursively the connected component
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	for each in graph[node]:
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		if (each not in visited):
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			_dfs(graph, visited, count, each)
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# Cut-Edge and Cut-Vertex identification
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def cut_edges(graph):
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	"""
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	Return the cut-edges of the given graph.
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	@rtype:  list
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	@return: List of cut-edges.
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	"""
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	pre = {}
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	low = {}
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	spanning_tree = {}
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	reply = []
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	pre[None] = 0
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	for each in graph:
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		if (not pre.has_key(each)):
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			spanning_tree[each] = None
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			_cut_dfs(graph, spanning_tree, pre, low, reply, each)
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	return reply
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def cut_nodes(graph):
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	"""
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	Return the cut-nodes of the given graph.
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	@rtype:  list
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	@return: List of cut-nodes.
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	"""
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	pre = {}	# Pre-ordering
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	low = {}	# Lowest pre[] reachable from this node going down the spanning tree + one backedge
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	reply = {}
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	spanning_tree = {}
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	pre[None] = 0
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	# Create spanning trees, calculate pre[], low[]
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	for each in graph:
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		if (not pre.has_key(each)):
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			spanning_tree[each] = None
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			_cut_dfs(graph, spanning_tree, pre, low, [], each)
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	# Find cuts
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	for each in graph:
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		# If node is not a root
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		if (spanning_tree[each] is not None):
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			for other in graph[each]:
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				# If there is no back-edge from descendent to a ancestral of each
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				if (low[other] >= pre[each] and spanning_tree[other] == each):
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					reply[each] = 1
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		# If node is a root
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		else:
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			children = 0
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			for other in graph:
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				if (spanning_tree[other] == each):
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					children = children + 1
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			# root is cut-vertex iff it has two or more children
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			if (children >= 2):
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				reply[each] = 1
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	return reply.keys()
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def _cut_dfs(graph, spanning_tree, pre, low, reply, node):
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	"""
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	Depth first search adapted for identification of cut-edges and cut-nodes.
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	@type  graph: graph
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	@param graph: Graph
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	@type  spanning_tree: dictionary
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	@param spanning_tree: Spanning tree being built for the graph by DFS.
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	@type  pre: dictionary
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	@param pre: Graph's preordering.
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	@type  low: dictionary
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	@param low: Associates to each node, the preordering index of the node of lowest preordering
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	accessible from the given node.
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	@type  reply: list
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	@param reply: List of cut-edges.
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	@type  node: node
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	@param node: Node to be explored by DFS.
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	"""
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	pre[node] = pre[None]
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	low[node] = pre[None]
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	pre[None] = pre[None] + 1
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	for each in graph[node]:
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		if (not pre.has_key(each)):
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			spanning_tree[each] = node
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			_cut_dfs(graph, spanning_tree, pre, low, reply, each)
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			if (low[node] > low[each]):
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				low[node] = low[each]
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			if (low[each] == pre[each]):
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				reply.append((node, each))
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		elif (low[node] > pre[each] and spanning_tree[node] != each):
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			low[node] = pre[each]