--- a/day2/session6.tex Tue Nov 10 16:26:47 2009 +0530
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-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Tutorial slides on Python.
-%
-% Author: Prabhu Ramachandran <prabhu at aero.iitb.ac.in>
-% Copyright (c) 2005-2009, Prabhu Ramachandran
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-
-\documentclass[compress,14pt]{beamer}
-% \documentclass[handout]{beamer}
-% \usepackage{pgfpages}
-% \pgfpagesuselayout{4 on 1}[a4paper,border, shrink=5mm,landscape]
-\usepackage{tikz}
-\newcommand{\hyperlinkmovie}{}
-%\usepackage{movie15}
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-% Note that in presentation mode
-% \paperwidth 364.19536pt
-% \paperheight 273.14662pt
-% h/w = 0.888
-
-
-\mode<presentation>
-{
- \usetheme{Warsaw}
- %\usetheme{Boadilla}
- %\usetheme{default}
- \useoutertheme{infolines}
- \setbeamercovered{transparent}
-}
-
-% To remove navigation symbols
-\setbeamertemplate{navigation symbols}{}
-
-\usepackage{amsmath}
-\usepackage[english]{babel}
-\usepackage[latin1]{inputenc}
-\usepackage{times}
-\usepackage[T1]{fontenc}
-
-% Taken from Fernando's slides.
-\usepackage{ae,aecompl}
-\usepackage{mathpazo,courier,euler}
-\usepackage[scaled=.95]{helvet}
-\usepackage{pgf}
-
-\definecolor{darkgreen}{rgb}{0,0.5,0}
-
-\usepackage{listings}
-\lstset{language=Python,
- basicstyle=\ttfamily\bfseries,
- commentstyle=\color{red}\itshape,
- stringstyle=\color{darkgreen},
- showstringspaces=false,
- keywordstyle=\color{blue}\bfseries}
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% My Macros
-\setbeamercolor{postit}{bg=yellow,fg=black}
-\setbeamercolor{emphbar}{bg=blue!20, fg=black}
-\newcommand{\emphbar}[1]
-{\begin{beamercolorbox}[rounded=true]{emphbar}
- {#1}
- \end{beamercolorbox}
-}
-%{\centerline{\fcolorbox{gray!50} {blue!10}{
-%\begin{minipage}{0.9\linewidth}
-% {#1}
-%\end{minipage}
-% }}}
-
-\newcommand{\myemph}[1]{\structure{\emph{#1}}}
-\newcommand{\PythonCode}[1]{\lstinline{#1}}
-
-\newcommand{\tvtk}{\texttt{tvtk}}
-\newcommand{\mlab}{\texttt{mlab}}
-
-\newcounter{time}
-\setcounter{time}{0}
-\newcommand{\inctime}[1]{\addtocounter{time}{#1}{\vspace*{0.1in}\tiny \thetime\ m}}
-
-\newcommand\BackgroundPicture[1]{%
- \setbeamertemplate{background}{%
- \parbox[c][\paperheight]{\paperwidth}{%
- \vfill \hfill
- \hfill \vfill
-}}}
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-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Configuring the theme
-%\setbeamercolor{normal text}{fg=white}
-%\setbeamercolor{background canvas}{bg=black}
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-
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Title page
-\title[3D Plotting]{3D data Visualization}
-
-\author[FOSSEE] {FOSSEE}
-
-\institute[IIT Bombay] {Department of Aerospace Engineering\\IIT Bombay}
-\date[] {8 November, 2009\\Day 2, Session 6}
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-
-%\pgfdeclareimage[height=0.75cm]{iitblogo}{iitblogo}
-%\logo{\pgfuseimage{iitblogo}}
-
-\AtBeginSection[]
-{
- \begin{frame}<beamer>
- \frametitle{Outline}
- \tableofcontents[currentsection,currentsubsection]
- \end{frame}
-}
-
-%% Delete this, if you do not want the table of contents to pop up at
-%% the beginning of each subsection:
-\AtBeginSubsection[]
-{
- \begin{frame}<beamer>
- \frametitle{Outline}
- \tableofcontents[currentsection,currentsubsection]
- \end{frame}
-}
-
-\AtBeginSection[]
-{
- \begin{frame}<beamer>
- \frametitle{Outline}
- \tableofcontents[currentsection,currentsubsection]
- \end{frame}
-}
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% DOCUMENT STARTS
-\begin{document}
-
-\begin{frame}
- \maketitle
-\end{frame}
-
-\begin{frame}
- \frametitle{Outline}
- \tableofcontents
- % You might wish to add the option [pausesections]
-\end{frame}
-
-\section{3D Data Visualization}
-
-\begin{frame}
- \frametitle{What is visualization?}
- \Large
- \begin{center}
- Visual representation of data
- \end{center}
-\end{frame}
-
-
-%% \begin{frame}
-%% \frametitle{Is this new?}
-%% \begin{center}
-%% We have moved from:
-%% \end{center}
-%% \begin{columns}
-%% \column{}
-%% \hspace*{-1in}
-%% \includegraphics[width=1.75in,height=1.75in, interpolate=true]{data/3832}
-%% \column{}\hspace*{-0.25in}
-%% To
-%% \column{}
-%% \hspace*{-1in}
-%% \includegraphics[width=1.75in, height=1.75in, interpolate=true]{data/torus}
-%% \end{columns}
-%% \end{frame}
-
-\begin{frame}
- \frametitle{3D visualization}
- \Large
- \begin{center}
- Harder but important
- \end{center}
-\end{frame}
-
-\begin{frame}
- \frametitle{Is this Graphics?}
- \Large
- \begin{center}
- Visualization is about data!
- \end{center}
-\end{frame}
-
-\begin{frame}
- \frametitle{Examples: trajectory in space}
- \Large
- \begin{center}
- \pgfimage[width=2.5in]{MEDIA/m2/mlab/plot3d_ex}
- \end{center}
-\end{frame}
-
-\begin{frame}
- \frametitle{Examples: Fire in a room}
- \Large
- \begin{center}
- Demo of data
- \end{center}
-\inctime{10}
-\end{frame}
-
-\section{Tools available}
-
-\subsection{mlab}
-
-\begin{frame}
- {Overview}
- \Large
- \begin{itemize}
- \item Simple
- \item Convenient
- \item Full-featured
- \end{itemize}
-\end{frame}
-
-\begin{frame}[fragile]
-
- \frametitle{Getting started}
- \myemph{\Large Vanilla:}
- \begin{lstlisting}[language=bash]
- $ ipython -wthread
- \end{lstlisting}
- \myemph{\Large with Pylab:}
- \begin{lstlisting}[language=bash]
- $ ipython -pylab -wthread
- \end{lstlisting}
-\end{frame}
-
-\begin{frame}[fragile]
- \frametitle{Using mlab}
-
- \begin{lstlisting}
-In []:from enthought.mayavi import mlab
- \end{lstlisting}
-
- \vspace*{0.5in}
-
- \myemph{\Large Try these}
-
- \vspace*{0.25in}
-
- \begin{lstlisting}
-In []: mlab.test_<TAB>
-In []: mlab.test_contour3d()
-In []: mlab.test_contour3d??
- \end{lstlisting}
-\end{frame}
-
-\begin{frame}
- {Exploring the view}
- \begin{columns}
- \column{0.6\textwidth}
- \pgfimage[width=3in]{MEDIA/m2/contour3d}
- \column{0.4\textwidth}
- \begin{itemize}
- \item Mouse
- \item Keyboard
- \item Toolbar
- \item Mayavi icon\pgfimage[width=0.2in]{MEDIA/m2/m2_icon}
- \end{itemize}
- \end{columns}
-\end{frame}
-
-\begin{frame}[fragile]
- \frametitle{\mlab\ plotting functions}
- \begin{columns}
- \column{0.25\textwidth}
- \myemph{\Large 0D data}
- \column{0.5\textwidth}
- \pgfimage[width=2in]{MEDIA/m2/mlab/points3d_ex}
- \end{columns}
-
- \begin{lstlisting}
-In []: t = linspace(0, 2*pi, 50)
-In []: u = cos(t) * pi
-In []: x, y, z = sin(u), cos(u), sin(t)
- \end{lstlisting}
- \emphbar{\PythonCode{In []: mlab.points3d(x, y, z)}}
-\end{frame}
-
-\begin{frame}
- \begin{columns}
- \column{0.25\textwidth}
- \myemph{\Large 1D data}
- \column{0.5\textwidth}
- \pgfimage[width=2.5in]{MEDIA/m2/mlab/plot3d_ex}
- \end{columns}
- \emphbar{\PythonCode{In []: mlab.plot3d(x, y, z, t)}}
-
- Plots lines between the points
-
-\end{frame}
-
-\begin{frame}[fragile]
- \begin{columns}
- \column{0.25\textwidth}
- \myemph{\Large 2D data}
- \column{0.5\textwidth}
- \pgfimage[width=2in]{MEDIA/m2/mlab/surf_ex}
- \end{columns}
- \begin{lstlisting}
-In []: x, y = mgrid[-3:3:100j,-3:3:100j]
-In []: z = sin(x*x + y*y)
- \end{lstlisting}
-
- \emphbar{\PythonCode{In []: mlab.surf(x, y, z)}}
-
- \alert{Assumes the points are rectilinear}
-
-\end{frame}
-
-\begin{frame}[fragile]
- \frametitle{mgrid}
- \begin{lstlisting}
-In []: mgrid[0:3,0:3]
-Out[]:
-array([[[0, 0, 0],
- [1, 1, 1],
- [2, 2, 2]],
-
- [[0, 1, 2],
- [0, 1, 2],
- [0, 1, 2]]])
-
-In []: mgrid[-1:1:5j]
-Out[]: array([-1., -0.5, 0., 0.5, 1.])
-\end{lstlisting}
-\end{frame}
-
-\begin{frame}[fragile]
- \frametitle{Example}
- \begin{lstlisting}
-In []: x, y = mgrid[-1:1:5j, -1:1:5j]
-In []: z = x*x + y*y
-
-In []: z
-Out[]:
-array([[ 2. , 1.25, 1. , 1.25, 2. ],
- [ 1.25, 0.5 , 0.25, 0.5 , 1.25],
- [ 1. , 0.25, 0. , 0.25, 1. ],
- [ 1.25, 0.5 , 0.25, 0.5 , 1.25],
- [ 2. , 1.25, 1. , 1.25, 2. ]])
-\end{lstlisting}
-\end{frame}
-
-\begin{frame}[fragile]
- \myemph{\Large 2D data: \texttt{mlab.mesh}}
- \vspace*{0.25in}
-
- \emphbar{\PythonCode{In []: mlab.mesh(x, y, z)}}
-
- \alert{Points needn't be regular}
-
- \vspace*{0.25in}
-\begin{lstlisting}
-In []: phi, theta = mgrid[0:pi:20j,
-... 0:2*pi:20j]
-In []: x = sin(phi)*cos(theta)
-In []: y = sin(phi)*sin(theta)
-In []: z = cos(phi)
-In []: mlab.mesh(x, y, z,
-... representation=
-... 'wireframe')
-\end{lstlisting}
-
-\end{frame}
-
-\begin{frame}[fragile]
-
- \begin{columns}
- \column{0.25\textwidth}
- \myemph{\Large 3D data}
- \column{0.5\textwidth}
- \pgfimage[width=1.5in]{MEDIA/m2/mlab/contour3d}\\
- \end{columns}
-\begin{lstlisting}
-In []: x, y, z = mgrid[-5:5:64j,
-... -5:5:64j,
-... -5:5:64j]
-In []: mlab.contour3d(x*x*0.5 + y*y +
- z*z*2)
-\end{lstlisting}
-\end{frame}
-
-\begin{frame}[fragile]
-
- \myemph{\Large 3D vector data: \PythonCode{mlab.quiver3d}}
- \vspace*{0.25in}
-
- \pgfimage[width=2in]{MEDIA/m2/mlab/quiver3d_ex}\\
-
-\begin{lstlisting}
-In []: mlab.test_quiver3d()
-\end{lstlisting}
-
-\emphbar{\PythonCode{obj = mlab.quiver3d(x, y, z, u, v, w)}}
-\inctime{20}
-\end{frame}
-
-
-\subsection{Mayavi2}
-
-\begin{frame}
- \frametitle{Introduction to Mayavi}
- \begin{itemize}
- \item Most scientists not interested in details of visualization
- \item Visualization of data files with a nice UI
- \item Interactive visualization of data (think Matlab)
- \item Embedding visualizations in applications
- \item Customization
- \end{itemize}
- \pause
- \begin{block}{The Goal}
- Provide a \alert{flexible} library/app for all of these needs!
- \end{block}
-\end{frame}
-
-\begin{frame}
- {Overview of features}
- \vspace*{-0.3in}
- \begin{center}
- \hspace*{-0.2in}\pgfimage[width=5in]{MEDIA/m2/m2_app3_3}
- \end{center}
-\end{frame}
-
-
-\begin{frame}
- \frametitle{Mayavi in applications}
- \vspace*{-0.3in}
- \begin{center}
- \hspace*{-0.2in}\pgfimage[width=4.5in]{MEDIA/m2/m2_envisage}
- \end{center}
-\end{frame}
-
-\begin{frame}
- \frametitle{Live in your dialogs}
- \vspace*{0.1in}
- \begin{center}
- \hspace*{-0.2in}\pgfimage[width=2.5in]{MEDIA/m2/mlab_tui}
- \end{center}
-\end{frame}
-
-\begin{frame}
- {Exploring the documentation}
- \begin{center}
- \pgfimage[width=4in]{MEDIA/m2/m2_ug_doc}
- \end{center}
-\end{frame}
-
-
-\begin{frame}
- \frametitle{Summary}
- \begin{itemize}
- \item \url{http://code.enthought.com/projects/mayavi}
- \item Uses VTK (\url{www.vtk.org})
- \item BSD license
- \item Linux, win32 and Mac OS X
- \item Highly scriptable
- \item Embed in Traits UIs (wxPython and PyQt4)
- \item Envisage Plugins
- \item Debian/Ubuntu/Fedora
- \item \alert{Pythonic}
- \end{itemize}
-
- \inctime{10}
-
-\end{frame}
-
-\begin{frame}
- {Getting hands dirty!}
-
- \begin{block}{Motivational problem}
- Atmospheric data of temperature over the surface of the earth.
- Let temperature ($T$) vary linearly with height ($z$):
- \begin{center}
- $T = 288.15 - 6.5z$
- \end{center}
- \end{block}
-\end{frame}
-
-\begin{frame}[fragile]
- \frametitle{Simple solution}
-
- \begin{lstlisting}
-lat = linspace(-89, 89, 37)
-lon = linspace(0, 360, 37)
-z = linspace(0, 100, 11)
- \end{lstlisting}
-\pause
- \begin{lstlisting}
-x, y, z = mgrid[0:360:37j,-89:89:37j,
- 0:100:11j]
-t = 288.15 - 6.5*z
-mlab.contour3d(x, y, z, t)
-mlab.outline()
-mlab.colorbar()
- \end{lstlisting}
-\end{frame}
-
-\begin{frame}[fragile]
- \frametitle{Exercise: Lorenz equation}
- \begin{columns}
- \column{0.25\textwidth}
- \begin{eqnarray*}
- \frac{d x}{dt} &=& s (y-x)\\
- \frac{d y}{d t} &=& rx -y -xz\\
- \frac{d z}{d t} &=& xy - bz\\
- \end{eqnarray*}
- \column{0.25\textwidth}
- Let $s=10,$
- $r=28,$
- $b=8./3.$
- \end{columns}
- \structure{\Large Region of interest}
- \begin{lstlisting}
-x, y, z = mgrid[-50:50:20j,-50:50:20j,
- -10:60:20j]
- \end{lstlisting}
-\inctime{20}
-
-\end{frame}
-\begin{frame}[fragile]
- \frametitle{Solution}
- \begin{lstlisting}
-def lorenz(x,y,z,s=10.,r=28.,b=8./3.):
- u = s*(y-x)
- v = r*x-y-x*z
- w = x*y-b*z
- return u,v,w
-x,y,z = mgrid [-50:50:20j,-50:50:20j,
- -10:60:20j ]
-u,v,w = lorenz( x , y , z )
-# Your plot here
-#
-mlab.show()
-
- \end{lstlisting}
-\end{frame}
-
-\begin{frame}
- \frametitle{We have covered:}
- \begin{itemize}
- \item Need of visualization.
- \item Using mlab to create 3 D plots.
- \item Mayavi Toolkit.
- \end{itemize}
-\end{frame}
-
-\end{document}
-