1 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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2 % Tutorial slides on Python. |
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3 % |
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4 % Author: Prabhu Ramachandran <prabhu at aero.iitb.ac.in> |
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5 % Copyright (c) 2005-2009, Prabhu Ramachandran |
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6 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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7 |
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8 \documentclass[compress,14pt]{beamer} |
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9 % \documentclass[handout]{beamer} |
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10 % \usepackage{pgfpages} |
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11 % \pgfpagesuselayout{4 on 1}[a4paper,border, shrink=5mm,landscape] |
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12 \usepackage{tikz} |
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13 \newcommand{\hyperlinkmovie}{} |
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14 %\usepackage{movie15} |
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15 |
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16 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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17 % Note that in presentation mode |
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18 % \paperwidth 364.19536pt |
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19 % \paperheight 273.14662pt |
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20 % h/w = 0.888 |
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21 |
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22 |
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23 \mode<presentation> |
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24 { |
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25 \usetheme{Warsaw} |
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26 %\usetheme{Boadilla} |
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27 %\usetheme{default} |
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28 \useoutertheme{infolines} |
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29 \setbeamercovered{transparent} |
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30 } |
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31 |
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32 % To remove navigation symbols |
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33 \setbeamertemplate{navigation symbols}{} |
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34 |
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35 \usepackage{amsmath} |
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36 \usepackage[english]{babel} |
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37 \usepackage[latin1]{inputenc} |
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38 \usepackage{times} |
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39 \usepackage[T1]{fontenc} |
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40 |
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41 % Taken from Fernando's slides. |
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42 \usepackage{ae,aecompl} |
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43 \usepackage{mathpazo,courier,euler} |
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44 \usepackage[scaled=.95]{helvet} |
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45 \usepackage{pgf} |
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46 |
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47 \definecolor{darkgreen}{rgb}{0,0.5,0} |
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48 |
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49 \usepackage{listings} |
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50 \lstset{language=Python, |
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51 basicstyle=\ttfamily\bfseries, |
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52 commentstyle=\color{red}\itshape, |
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53 stringstyle=\color{darkgreen}, |
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54 showstringspaces=false, |
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55 keywordstyle=\color{blue}\bfseries} |
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56 |
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57 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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58 % My Macros |
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59 \setbeamercolor{postit}{bg=yellow,fg=black} |
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60 \setbeamercolor{emphbar}{bg=blue!20, fg=black} |
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61 \newcommand{\emphbar}[1] |
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62 {\begin{beamercolorbox}[rounded=true]{emphbar} |
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63 {#1} |
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64 \end{beamercolorbox} |
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65 } |
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66 %{\centerline{\fcolorbox{gray!50} {blue!10}{ |
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67 %\begin{minipage}{0.9\linewidth} |
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68 % {#1} |
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69 %\end{minipage} |
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70 % }}} |
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71 |
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72 \newcommand{\myemph}[1]{\structure{\emph{#1}}} |
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73 \newcommand{\PythonCode}[1]{\lstinline{#1}} |
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74 |
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75 \newcommand{\tvtk}{\texttt{tvtk}} |
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76 \newcommand{\mlab}{\texttt{mlab}} |
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77 |
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78 \newcounter{time} |
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79 \setcounter{time}{0} |
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80 \newcommand{\inctime}[1]{\addtocounter{time}{#1}{\vspace*{0.1in}\tiny \thetime\ m}} |
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81 |
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82 \newcommand\BackgroundPicture[1]{% |
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83 \setbeamertemplate{background}{% |
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84 \parbox[c][\paperheight]{\paperwidth}{% |
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85 \vfill \hfill |
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86 \hfill \vfill |
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87 }}} |
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88 |
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89 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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90 % Configuring the theme |
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91 %\setbeamercolor{normal text}{fg=white} |
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92 %\setbeamercolor{background canvas}{bg=black} |
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93 |
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94 |
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95 |
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96 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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97 % Title page |
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98 \title[3D Plotting]{3D data Visualization} |
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99 |
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100 \author[FOSSEE] {FOSSEE} |
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101 |
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102 \institute[IIT Bombay] {Department of Aerospace Engineering\\IIT Bombay} |
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103 \date[] {8 November, 2009\\Day 2, Session 6} |
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104 |
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105 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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106 |
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107 %\pgfdeclareimage[height=0.75cm]{iitblogo}{iitblogo} |
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108 %\logo{\pgfuseimage{iitblogo}} |
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109 |
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110 \AtBeginSection[] |
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111 { |
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112 \begin{frame}<beamer> |
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113 \frametitle{Outline} |
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114 \tableofcontents[currentsection,currentsubsection] |
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115 \end{frame} |
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116 } |
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117 |
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118 %% Delete this, if you do not want the table of contents to pop up at |
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119 %% the beginning of each subsection: |
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120 \AtBeginSubsection[] |
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121 { |
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122 \begin{frame}<beamer> |
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123 \frametitle{Outline} |
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124 \tableofcontents[currentsection,currentsubsection] |
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125 \end{frame} |
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126 } |
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127 |
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128 \AtBeginSection[] |
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129 { |
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130 \begin{frame}<beamer> |
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131 \frametitle{Outline} |
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132 \tableofcontents[currentsection,currentsubsection] |
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133 \end{frame} |
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134 } |
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135 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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136 % DOCUMENT STARTS |
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137 \begin{document} |
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138 |
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139 \begin{frame} |
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140 \maketitle |
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141 \end{frame} |
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142 |
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143 \begin{frame} |
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144 \frametitle{Outline} |
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145 \tableofcontents |
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146 % You might wish to add the option [pausesections] |
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147 \end{frame} |
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148 |
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149 \section{3D Data Visualization} |
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150 |
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151 \begin{frame} |
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152 \frametitle{What is visualization?} |
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153 \Large |
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154 \begin{center} |
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155 Visual representation of data |
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156 \end{center} |
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157 \end{frame} |
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158 |
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159 |
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160 %% \begin{frame} |
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161 %% \frametitle{Is this new?} |
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162 %% \begin{center} |
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163 %% We have moved from: |
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164 %% \end{center} |
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165 %% \begin{columns} |
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166 %% \column{} |
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167 %% \hspace*{-1in} |
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168 %% \includegraphics[width=1.75in,height=1.75in, interpolate=true]{data/3832} |
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169 %% \column{}\hspace*{-0.25in} |
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170 %% To |
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171 %% \column{} |
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172 %% \hspace*{-1in} |
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173 %% \includegraphics[width=1.75in, height=1.75in, interpolate=true]{data/torus} |
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174 %% \end{columns} |
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175 %% \end{frame} |
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176 |
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177 \begin{frame} |
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178 \frametitle{3D visualization} |
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179 \Large |
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180 \begin{center} |
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181 Harder but important |
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182 \end{center} |
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183 \end{frame} |
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184 |
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185 \begin{frame} |
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186 \frametitle{Is this Graphics?} |
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187 \Large |
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188 \begin{center} |
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189 Visualization is about data! |
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190 \end{center} |
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191 \end{frame} |
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192 |
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193 \begin{frame} |
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194 \frametitle{Examples: trajectory in space} |
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195 \Large |
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196 \begin{center} |
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197 \pgfimage[width=2.5in]{MEDIA/m2/mlab/plot3d_ex} |
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198 \end{center} |
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199 \end{frame} |
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200 |
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201 \begin{frame} |
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202 \frametitle{Examples: Fire in a room} |
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203 \Large |
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204 \begin{center} |
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205 Demo of data |
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206 \end{center} |
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207 \inctime{10} |
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208 \end{frame} |
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209 |
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210 \section{Tools available} |
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211 |
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212 \subsection{mlab} |
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213 |
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214 \begin{frame} |
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215 {Overview} |
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216 \Large |
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217 \begin{itemize} |
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218 \item Simple |
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219 \item Convenient |
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220 \item Full-featured |
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221 \end{itemize} |
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222 \end{frame} |
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223 |
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224 \begin{frame}[fragile] |
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225 |
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226 \frametitle{Getting started} |
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227 \myemph{\Large Vanilla:} |
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228 \begin{lstlisting}[language=bash] |
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229 $ ipython -wthread |
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230 \end{lstlisting} |
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231 \myemph{\Large with Pylab:} |
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232 \begin{lstlisting}[language=bash] |
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233 $ ipython -pylab -wthread |
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234 \end{lstlisting} |
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235 \end{frame} |
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236 |
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237 \begin{frame}[fragile] |
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238 \frametitle{Using mlab} |
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239 |
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240 \begin{lstlisting} |
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241 In []:from enthought.mayavi import mlab |
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242 \end{lstlisting} |
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243 |
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244 \vspace*{0.5in} |
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245 |
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246 \myemph{\Large Try these} |
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247 |
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248 \vspace*{0.25in} |
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249 |
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250 \begin{lstlisting} |
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251 In []: mlab.test_<TAB> |
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252 In []: mlab.test_contour3d() |
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253 In []: mlab.test_contour3d?? |
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254 \end{lstlisting} |
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255 \end{frame} |
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256 |
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257 \begin{frame} |
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258 {Exploring the view} |
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259 \begin{columns} |
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260 \column{0.6\textwidth} |
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261 \pgfimage[width=3in]{MEDIA/m2/contour3d} |
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262 \column{0.4\textwidth} |
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263 \begin{itemize} |
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264 \item Mouse |
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265 \item Keyboard |
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266 \item Toolbar |
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267 \item Mayavi icon\pgfimage[width=0.2in]{MEDIA/m2/m2_icon} |
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268 \end{itemize} |
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269 \end{columns} |
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270 \end{frame} |
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271 |
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272 \begin{frame}[fragile] |
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273 \frametitle{\mlab\ plotting functions} |
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274 \begin{columns} |
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275 \column{0.25\textwidth} |
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276 \myemph{\Large 0D data} |
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277 \column{0.5\textwidth} |
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278 \pgfimage[width=2in]{MEDIA/m2/mlab/points3d_ex} |
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279 \end{columns} |
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280 |
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281 \begin{lstlisting} |
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282 In []: t = linspace(0, 2*pi, 50) |
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283 In []: u = cos(t) * pi |
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284 In []: x, y, z = sin(u), cos(u), sin(t) |
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285 \end{lstlisting} |
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286 \emphbar{\PythonCode{In []: mlab.points3d(x, y, z)}} |
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287 \end{frame} |
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288 |
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289 \begin{frame} |
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290 \begin{columns} |
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291 \column{0.25\textwidth} |
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292 \myemph{\Large 1D data} |
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293 \column{0.5\textwidth} |
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294 \pgfimage[width=2.5in]{MEDIA/m2/mlab/plot3d_ex} |
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295 \end{columns} |
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296 \emphbar{\PythonCode{In []: mlab.plot3d(x, y, z, t)}} |
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297 |
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298 Plots lines between the points |
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299 |
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300 \end{frame} |
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301 |
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302 \begin{frame}[fragile] |
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303 \begin{columns} |
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304 \column{0.25\textwidth} |
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305 \myemph{\Large 2D data} |
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306 \column{0.5\textwidth} |
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307 \pgfimage[width=2in]{MEDIA/m2/mlab/surf_ex} |
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308 \end{columns} |
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309 \begin{lstlisting} |
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310 In []: x, y = mgrid[-3:3:100j,-3:3:100j] |
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311 In []: z = sin(x*x + y*y) |
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312 \end{lstlisting} |
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313 |
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314 \emphbar{\PythonCode{In []: mlab.surf(x, y, z)}} |
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315 |
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316 \alert{Assumes the points are rectilinear} |
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317 |
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318 \end{frame} |
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319 |
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320 \begin{frame}[fragile] |
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321 \frametitle{mgrid} |
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322 \begin{lstlisting} |
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323 In []: mgrid[0:3,0:3] |
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324 Out[]: |
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325 array([[[0, 0, 0], |
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326 [1, 1, 1], |
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327 [2, 2, 2]], |
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328 |
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329 [[0, 1, 2], |
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330 [0, 1, 2], |
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331 [0, 1, 2]]]) |
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332 |
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333 In []: mgrid[-1:1:5j] |
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334 Out[]: array([-1., -0.5, 0., 0.5, 1.]) |
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335 \end{lstlisting} |
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336 \end{frame} |
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337 |
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338 \begin{frame}[fragile] |
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339 \frametitle{Example} |
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340 \begin{lstlisting} |
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341 In []: x, y = mgrid[-1:1:5j, -1:1:5j] |
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342 In []: z = x*x + y*y |
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343 |
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344 In []: z |
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345 Out[]: |
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346 array([[ 2. , 1.25, 1. , 1.25, 2. ], |
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347 [ 1.25, 0.5 , 0.25, 0.5 , 1.25], |
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348 [ 1. , 0.25, 0. , 0.25, 1. ], |
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349 [ 1.25, 0.5 , 0.25, 0.5 , 1.25], |
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350 [ 2. , 1.25, 1. , 1.25, 2. ]]) |
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351 \end{lstlisting} |
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352 \end{frame} |
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353 |
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354 \begin{frame}[fragile] |
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355 \myemph{\Large 2D data: \texttt{mlab.mesh}} |
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356 \vspace*{0.25in} |
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357 |
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358 \emphbar{\PythonCode{In []: mlab.mesh(x, y, z)}} |
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359 |
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360 \alert{Points needn't be regular} |
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361 |
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362 \vspace*{0.25in} |
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363 \begin{lstlisting} |
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364 In []: phi, theta = mgrid[0:pi:20j, |
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365 ... 0:2*pi:20j] |
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366 In []: x = sin(phi)*cos(theta) |
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367 In []: y = sin(phi)*sin(theta) |
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368 In []: z = cos(phi) |
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369 In []: mlab.mesh(x, y, z, |
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370 ... representation= |
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371 ... 'wireframe') |
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372 \end{lstlisting} |
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373 |
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374 \end{frame} |
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375 |
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376 \begin{frame}[fragile] |
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377 |
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378 \begin{columns} |
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379 \column{0.25\textwidth} |
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380 \myemph{\Large 3D data} |
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381 \column{0.5\textwidth} |
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382 \pgfimage[width=1.5in]{MEDIA/m2/mlab/contour3d}\\ |
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383 \end{columns} |
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384 \begin{lstlisting} |
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385 In []: x, y, z = mgrid[-5:5:64j, |
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386 ... -5:5:64j, |
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387 ... -5:5:64j] |
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388 In []: mlab.contour3d(x*x*0.5 + y*y + |
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389 z*z*2) |
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390 \end{lstlisting} |
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391 \end{frame} |
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392 |
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393 \begin{frame}[fragile] |
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394 |
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395 \myemph{\Large 3D vector data: \PythonCode{mlab.quiver3d}} |
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396 \vspace*{0.25in} |
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397 |
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398 \pgfimage[width=2in]{MEDIA/m2/mlab/quiver3d_ex}\\ |
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399 |
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400 \begin{lstlisting} |
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401 In []: mlab.test_quiver3d() |
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402 \end{lstlisting} |
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403 |
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404 \emphbar{\PythonCode{obj = mlab.quiver3d(x, y, z, u, v, w)}} |
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405 \inctime{20} |
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406 \end{frame} |
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407 |
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408 |
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409 \subsection{Mayavi2} |
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410 |
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411 \begin{frame} |
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412 \frametitle{Introduction to Mayavi} |
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413 \begin{itemize} |
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414 \item Most scientists not interested in details of visualization |
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415 \item Visualization of data files with a nice UI |
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416 \item Interactive visualization of data (think Matlab) |
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417 \item Embedding visualizations in applications |
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418 \item Customization |
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419 \end{itemize} |
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420 \pause |
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421 \begin{block}{The Goal} |
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422 Provide a \alert{flexible} library/app for all of these needs! |
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423 \end{block} |
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424 \end{frame} |
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425 |
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426 \begin{frame} |
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427 {Overview of features} |
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428 \vspace*{-0.3in} |
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429 \begin{center} |
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430 \hspace*{-0.2in}\pgfimage[width=5in]{MEDIA/m2/m2_app3_3} |
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431 \end{center} |
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432 \end{frame} |
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433 |
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434 |
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435 \begin{frame} |
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436 \frametitle{Mayavi in applications} |
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437 \vspace*{-0.3in} |
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438 \begin{center} |
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439 \hspace*{-0.2in}\pgfimage[width=4.5in]{MEDIA/m2/m2_envisage} |
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440 \end{center} |
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441 \end{frame} |
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442 |
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443 \begin{frame} |
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444 \frametitle{Live in your dialogs} |
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445 \vspace*{0.1in} |
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446 \begin{center} |
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447 \hspace*{-0.2in}\pgfimage[width=2.5in]{MEDIA/m2/mlab_tui} |
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448 \end{center} |
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449 \end{frame} |
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450 |
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451 \begin{frame} |
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452 {Exploring the documentation} |
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453 \begin{center} |
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454 \pgfimage[width=4in]{MEDIA/m2/m2_ug_doc} |
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455 \end{center} |
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456 \end{frame} |
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457 |
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458 |
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459 \begin{frame} |
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460 \frametitle{Summary} |
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461 \begin{itemize} |
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462 \item \url{http://code.enthought.com/projects/mayavi} |
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463 \item Uses VTK (\url{www.vtk.org}) |
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464 \item BSD license |
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465 \item Linux, win32 and Mac OS X |
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466 \item Highly scriptable |
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467 \item Embed in Traits UIs (wxPython and PyQt4) |
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468 \item Envisage Plugins |
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469 \item Debian/Ubuntu/Fedora |
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470 \item \alert{Pythonic} |
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471 \end{itemize} |
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472 |
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473 \inctime{10} |
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474 |
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475 \end{frame} |
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476 |
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477 \begin{frame} |
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478 {Getting hands dirty!} |
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479 |
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480 \begin{block}{Motivational problem} |
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481 Atmospheric data of temperature over the surface of the earth. |
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482 Let temperature ($T$) vary linearly with height ($z$): |
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483 \begin{center} |
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484 $T = 288.15 - 6.5z$ |
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485 \end{center} |
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486 \end{block} |
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487 \end{frame} |
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488 |
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489 \begin{frame}[fragile] |
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490 \frametitle{Simple solution} |
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491 |
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492 \begin{lstlisting} |
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493 lat = linspace(-89, 89, 37) |
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494 lon = linspace(0, 360, 37) |
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495 z = linspace(0, 100, 11) |
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496 \end{lstlisting} |
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497 \pause |
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498 \begin{lstlisting} |
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499 x, y, z = mgrid[0:360:37j,-89:89:37j, |
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500 0:100:11j] |
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501 t = 288.15 - 6.5*z |
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502 mlab.contour3d(x, y, z, t) |
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503 mlab.outline() |
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504 mlab.colorbar() |
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505 \end{lstlisting} |
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506 \end{frame} |
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507 |
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508 \begin{frame}[fragile] |
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509 \frametitle{Exercise: Lorenz equation} |
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510 \begin{columns} |
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511 \column{0.25\textwidth} |
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512 \begin{eqnarray*} |
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513 \frac{d x}{dt} &=& s (y-x)\\ |
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514 \frac{d y}{d t} &=& rx -y -xz\\ |
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515 \frac{d z}{d t} &=& xy - bz\\ |
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516 \end{eqnarray*} |
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517 \column{0.25\textwidth} |
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518 Let $s=10,$ |
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519 $r=28,$ |
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520 $b=8./3.$ |
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521 \end{columns} |
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522 \structure{\Large Region of interest} |
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523 \begin{lstlisting} |
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524 x, y, z = mgrid[-50:50:20j,-50:50:20j, |
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525 -10:60:20j] |
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526 \end{lstlisting} |
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527 \inctime{20} |
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528 |
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529 \end{frame} |
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530 \begin{frame}[fragile] |
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531 \frametitle{Solution} |
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532 \begin{lstlisting} |
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533 def lorenz(x,y,z,s=10.,r=28.,b=8./3.): |
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534 u = s*(y-x) |
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535 v = r*x-y-x*z |
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536 w = x*y-b*z |
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537 return u,v,w |
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538 x,y,z = mgrid [-50:50:20j,-50:50:20j, |
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539 -10:60:20j ] |
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540 u,v,w = lorenz( x , y , z ) |
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541 # Your plot here |
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542 # |
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543 mlab.show() |
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544 |
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545 \end{lstlisting} |
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546 \end{frame} |
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547 |
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548 \begin{frame} |
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549 \frametitle{We have covered:} |
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550 \begin{itemize} |
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551 \item Need of visualization. |
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552 \item Using mlab to create 3 D plots. |
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553 \item Mayavi Toolkit. |
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554 \end{itemize} |
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555 \end{frame} |
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556 |
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557 \end{document} |
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558 |
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