* Solving ODEs
*** Outline
***** Introduction
******* What are we going to do?
******* How are we going to do?
******* Arsenal Required
********* working knowledge of arrays
********* working knowledge of functions
*** Script
    Welcome friends. 
    
    In this tutorial we shall look at solving Ordinary Differential Equations,
    ODE henceforth using odeint in Python. In this tutorial we shall be using
    the concepts of arrays, functions and lists which we have covered in various
    previous tutorials.

    Let's consider the classic problem of the spread of an epidemic in a
    population.
    This is given by the ordinary differential equation dy/dt = ky(L-y) 
    where L is the total population and k is an arbitrary constant. For our
    problem Let us use L=25000, k=0.00003.
    Let the boundary condition be y(0)=250.

    Let's now fire up IPython by typing ipython -pylab interpreter.    
    
    As we saw in one of earlier session, sometimes pylab wont 'import' all
    packages. For solving 'ordinary differential equations' also we shall
    have to import 'odeint' function which is a part of the SciPy package.
    So we run the magic command:

    In []: from scipy.integrate import odeint

    For now just remember this as a command that does some magic to obtain
    the function odeint in to our program.
    The details regarding `import' shall be covered in a subsequent tutorial.

    We can represent the given ODE as a Python function.
    This function takes the dependent variable y and the independent variable t
    as arguments and returns the ODE.
    Our function looks like this:
    (Showing the slide should be sufficient)

    Let us now define our function.

    In []: def epid(y, t):
      ....     k = 0.00003
      ....     L = 25000
      ....     return k*y*(L-y)

    Independent variable t can be assigned the values in the interval of
    0 and 12 with 61 points using linspace:

    In []: t = linspace(0, 12, 61)

    Now obtaining the solution of the ode we defined, is as simple as
    calling the Python's odeint function which we just imported:
    
    In []: y = odeint(epid, 250, t)

    We can plot the the values of y against t to get a graphical picture our ODE.

    plot(y, t)
    Lets now close this plot and move on to solving ordinary differential equation of 
    second order.
    Here we shall take the example ODEs of a simple pendulum.

    The equations can be written as a system of two first order ODEs

    d(theta)/dt = omega
    
    and

    d(omega)/dt = - g/L sin(theta)

    Let us define the boundary conditions as: at t = 0, 
    theta = theta naught = 10 degrees and 
    omega = 0

    Let us first define our system of equations as a Python function, pend_int.
    As in the earlier case of single ODE we shall use odeint function of Python
    to solve this system of equations by passing pend_int to odeint.

    pend_int is defined as shown:

    In []: def pend_int(initial, t):
      ....     theta = initial[0]
      ....     omega = initial[1]
      ....     g = 9.81
      ....     L = 0.2
      ....     f=[omega, -(g/L)*sin(theta)]
      ....     return f
      ....

    It takes two arguments. The first argument itself containing two
    dependent variables in the system, theta and omega.
    The second argument is the independent variable t.

    In the function we assign the first and second values of the
    initial argument to theta and omega respectively.
    Acceleration due to gravity, as we know is 9.81 meter per second sqaure.
    Let the length of the the pendulum be 0.2 meter.

    We create a list, f, of two equations which corresponds to our two ODEs,
    that is d(theta)/dt = omega and d(omega)/dt = - g/L sin(theta).
    We return this list of equations f.

    Now we can create a set of values for our time variable t over which we need
    to integrate our system of ODEs. Let us say,

    In []: t = linspace(0, 20, 101)

    We shall assign the boundary conditions to the variable initial.

    In []: initial = [10*2*pi/360, 0]

    Now solving this system is just a matter of calling the odeint function with
    the correct arguments.

    In []: pend_sol = odeint(pend_int, initial,t)

    In []: plot(pend_sol[0], t) plot theta against t
    In []: plot(pend_sol[1], t) will plot omega against t
    Plotting theta against t and omega against t we obtain the plots as shown
    in the slide.

    Thus we come to the end of this tutorial on solving ordinary differential
    equations in Python. In this tutorial we have learnt how to solve ordinary
    differential equations of first and second order.

*** Notes